WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K06A9.1a.1 Sequence Name  K06A9.1a.1
Length (nt)  3774   Chromosome Location  X: 1547505-1560144
Chromosome . Primary Identifier  X Chromosome Location . Start  1547505
Chromosome Location . End  1560144 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K06A9.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019435 K06A9.1 K06A9.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K06A9.1a K06A9.1a 3354   X: 1547509-1547620

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K06A9.1a.1 1547505 1560144 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon224200   116   X: 1547505-1547620 Caenorhabditis elegans
Exon224207   113   X: 1547671-1547783 Caenorhabditis elegans
Exon224214   84   X: 1547833-1547916 Caenorhabditis elegans
Exon224221   86   X: 1547963-1548048 Caenorhabditis elegans
Exon224228   78   X: 1548105-1548182 Caenorhabditis elegans
Exon224235   191   X: 1548234-1548424 Caenorhabditis elegans
Exon224242   2106   X: 1548473-1550578 Caenorhabditis elegans
Exon224250   30   X: 1558455-1558484 Caenorhabditis elegans
Exon224257   80   X: 1558758-1558837 Caenorhabditis elegans
Exon224264   194   X: 1558881-1559074 Caenorhabditis elegans
Exon224271   78   X: 1559118-1559195 Caenorhabditis elegans
Exon224278   80   X: 1559477-1559556 Caenorhabditis elegans
Exon224290   538   X: 1559607-1560144 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K06A9.1a.1 1547505 1560144 1

1 Sequence

Length
3774

1 Sequence Ontology Term

Identifier Name Description
transcript