WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K06A9.1c.1 Sequence Name  K06A9.1c.1
Length (nt)  4536   Chromosome Location  X: 1547506-1560145
Chromosome . Primary Identifier  X Chromosome Location . Start  1547506
Chromosome Location . End  1560145 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K06A9.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019435 K06A9.1 K06A9.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K06A9.1c K06A9.1c 2478   X: 1549447-1551340

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K06A9.1c.1 1547506 1560145 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon224201   115   X: 1547506-1547620 Caenorhabditis elegans
Exon224209   113   X: 1547671-1547783 Caenorhabditis elegans
Exon224216   84   X: 1547833-1547916 Caenorhabditis elegans
Exon224223   86   X: 1547963-1548048 Caenorhabditis elegans
Exon224230   78   X: 1548105-1548182 Caenorhabditis elegans
Exon224237   191   X: 1548234-1548424 Caenorhabditis elegans
Exon224243   2868   X: 1548473-1551340 Caenorhabditis elegans
Exon224252   30   X: 1558455-1558484 Caenorhabditis elegans
Exon224259   80   X: 1558758-1558837 Caenorhabditis elegans
Exon224266   194   X: 1558881-1559074 Caenorhabditis elegans
Exon224273   78   X: 1559118-1559195 Caenorhabditis elegans
Exon224280   80   X: 1559477-1559556 Caenorhabditis elegans
Exon224291   539   X: 1559607-1560145 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K06A9.1c.1 1547506 1560145 1

1 Sequence

Length
4536

1 Sequence Ontology Term

Identifier Name Description
transcript