WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H11E01.3a.1 Sequence Name  H11E01.3a.1
Length (nt)  5113   Chromosome Location  X: 1604906-1619151
Chromosome . Primary Identifier  X Chromosome Location . Start  1604906
Chromosome Location . End  1619151 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H11E01.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019188 H11E01.3 H11E01.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H11E01.3a H11E01.3a 4341   X: 1610305-1610330

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:H11E01.3a.1 1604906 1619151 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon224327   142   X: 1604906-1605047 Caenorhabditis elegans
Exon224330   80   X: 1610251-1610330 Caenorhabditis elegans
Exon224334   140   X: 1610392-1610531 Caenorhabditis elegans
Exon224338   176   X: 1610579-1610754 Caenorhabditis elegans
Exon224342   146   X: 1611724-1611869 Caenorhabditis elegans
Exon224348   104   X: 1613171-1613274 Caenorhabditis elegans
Exon224352   115   X: 1613534-1613648 Caenorhabditis elegans
Exon224356   134   X: 1613693-1613826 Caenorhabditis elegans
Exon224360   3257   X: 1613918-1617174 Caenorhabditis elegans
Exon224364   113   X: 1617229-1617341 Caenorhabditis elegans
Exon224371   706   X: 1618446-1619151 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:H11E01.3a.1 1604906 1619151 1

1 Sequence

Length
5113

1 Sequence Ontology Term

Identifier Name Description
transcript