WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H11E01.3c.1 Sequence Name  H11E01.3c.1
Length (nt)  4500   Chromosome Location  X: 1604943-1618575
Chromosome . Primary Identifier  X Chromosome Location . Start  1604943
Chromosome Location . End  1618575 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H11E01.3c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019188 H11E01.3 H11E01.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H11E01.3c H11E01.3c 4500   X: 1604943-1605047

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:H11E01.3c.1 1604943 1618575 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon224328   105   X: 1604943-1605047 Caenorhabditis elegans
Exon224331   80   X: 1610251-1610330 Caenorhabditis elegans
Exon224336   140   X: 1610392-1610531 Caenorhabditis elegans
Exon224340   176   X: 1610579-1610754 Caenorhabditis elegans
Exon224344   146   X: 1611724-1611869 Caenorhabditis elegans
Exon224350   104   X: 1613171-1613274 Caenorhabditis elegans
Exon224354   115   X: 1613534-1613648 Caenorhabditis elegans
Exon224358   134   X: 1613693-1613826 Caenorhabditis elegans
Exon224362   3257   X: 1613918-1617174 Caenorhabditis elegans
Exon224366   113   X: 1617229-1617341 Caenorhabditis elegans
Exon224369   130   X: 1618446-1618575 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:H11E01.3c.1 1604943 1618575 1

1 Sequence

Length
4500

1 Sequence Ontology Term

Identifier Name Description
transcript