WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00304786 Gene Name  C36C9.12
Sequence Name  ? C36C9.12 Organism  Caenorhabditis elegans
Automated Description  Is affected by eat-2 based on microarray studies. Biotype  SO:0001217
Genetic Position  X:± Length (nt)  ? 954
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00304786

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C36C9.12.1 C36C9.12.1 513   X: 1689143-1690096
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C36C9.12 C36C9.12 129   X: 1689416-1689452

2 RNAi Result

WormBase ID
WBRNAi00042068
WBRNAi00011701

8 Allele

Public Name
gk963725
gk964444
gk964445
gk963613
gk963330
WBVar01824575
gk572308
gk762230

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00304786 1689143 1690096 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_1688328..1689142   815 X: 1688328-1689142 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Genes with significantly increased expression in eat-2(ad465) treated with 2% DMSO for 72 hours, comparing to in N2 treated with 2% DMSO for 72 hours. Analysis of gene expression data was carried out with the Affymetrix Transcriptome Analysis Console. Data preprocessing (using RMA normalization) and QC metrics were performed using Affymetrix Expression Console TM and manually inspected afterwards. Expression analysis was carried out for each two pairwise conditions. FDR statistical correction for multiple testing resulted in a slightly lower number of DEGs in most cases. P-value < 0.05 and fold change > 2.0 were used to determine differentially expressed genes. WBPaper00048989:eat-2(ad465)_upregulated_in-DMSO

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00304786 1689143 1690096 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
954

1 Sequence Ontology Term