WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F53B1.6.1 Sequence Name  F53B1.6.1
Length (nt)  1678   Chromosome Location  X: 2114618-2118262
Chromosome . Primary Identifier  X Chromosome Location . Start  2114618
Chromosome Location . End  2118262 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53B1.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018738 swip-10 F53B1.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53B1.6 F53B1.6 1461   X: 2114728-2114909

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F53B1.6.1 2114618 2118262 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon225100   292   X: 2114618-2114909 Caenorhabditis elegans
Exon225101   118   X: 2114954-2115071 Caenorhabditis elegans
Exon225102   164   X: 2115122-2115285 Caenorhabditis elegans
Exon225103   136   X: 2115335-2115470 Caenorhabditis elegans
Exon225104   131   X: 2115521-2115651 Caenorhabditis elegans
Exon225105   82   X: 2117152-2117233 Caenorhabditis elegans
Exon225106   207   X: 2117374-2117580 Caenorhabditis elegans
Exon225107   177   X: 2117624-2117800 Caenorhabditis elegans
Exon225108   200   X: 2117845-2118044 Caenorhabditis elegans
Exon225109   171   X: 2118092-2118262 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F53B1.6.1 2114618 2118262 -1

1 Sequence

Length
1678

1 Sequence Ontology Term

Identifier Name Description
transcript