WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T01B6.3a.1 Sequence Name  T01B6.3a.1
Length (nt)  1868   Chromosome Location  X: 2314896-2319338
Chromosome . Primary Identifier  X Chromosome Location . Start  2314896
Chromosome Location . End  2319338 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T01B6.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020135 aakg-4 T01B6.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T01B6.3a T01B6.3a 1398   X: 2315361-2315507

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T01B6.3a.1 2314896 2319338 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon225420   612   X: 2314896-2315507 Caenorhabditis elegans
Exon225421   282   X: 2315558-2315839 Caenorhabditis elegans
Exon225425   90   X: 2316536-2316625 Caenorhabditis elegans
Exon225426   75   X: 2317288-2317362 Caenorhabditis elegans
Exon225427   64   X: 2317415-2317478 Caenorhabditis elegans
Exon225428   77   X: 2317890-2317966 Caenorhabditis elegans
Exon225429   144   X: 2318078-2318221 Caenorhabditis elegans
Exon225430   101   X: 2318280-2318380 Caenorhabditis elegans
Exon225431   70   X: 2318674-2318743 Caenorhabditis elegans
Exon225432   262   X: 2318793-2319054 Caenorhabditis elegans
Exon225433   91   X: 2319248-2319338 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T01B6.3a.1 2314896 2319338 -1

1 Sequence

Length
1868

1 Sequence Ontology Term

Identifier Name Description
transcript