Genomics
3 Transcripts
| Class | WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|---|
| MiRNAPrimaryTranscript | Transcript:T01B6.12.1 | T01B6.12.1 |
131
 |
X: 2328994-2329124 |
| MiRNA | Transcript:T01B6.12a | T01B6.12a |
24
|
X: 2329038-2329061 |
| MiRNA | Transcript:T01B6.12b | T01B6.12b |
23
|
X: 2329081-2329103 |
Other
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00220055 | 2328994 | 2329124 | 1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrX_2329125..2330724 | 1600 | X: 2329125-2330724 | Caenorhabditis elegans |
2 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly increased expression in set-2(tm1630) animals at embryo stage, comparing to in N2 animals. | DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction. | WBPaper00060014:set-2(tm1630)_upregulated | |
| microRNA that showed significantly increased expression in CT20 zaIs5 [alg-1p-GFP-alg-1; rol-6(su1006)] comparing to in control animals of PE255 feIs5 [sur-luciferase-GFP; rol-6(su1006)]. | fold change > 2. | WBPaper00066713:alg-1(overexpression)_upregulated |
1 Expression Patterns
| Remark | Reporter Gene | Primary Identifier | Pattern | Subcellular Localization |
|---|---|---|---|---|
| Expr13541 | Neurons in the head and the tail. |