WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219722 Gene Name  linc-154
Sequence Name  ? T01B6.11 Organism  Caenorhabditis elegans
Automated Description  Is affected by adr-1 based on RNA-seq studies. Biotype  SO:0001641
Genetic Position  X :-15.6918± Length (nt)  ? 2349
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219722

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T01B6.11 T01B6.11 2349   X: 2326744-2329092
 

Other

0 CDSs

1 RNAi Result

WormBase ID
WBRNAi00022921

36 Allele

Public Name
gk963725
WBVar01757679
WBVar01601037
WBVar00076007
WBVar00076008
WBVar00076009
WBVar01979695
WBVar01979696
gk752778
gk653942
gk667912
gk832445
WBVar01619373
gk500809
WBVar01619374
gk569612
gk371286
gk755096
gk435142
gk529950
gk880381
gk273295
gk354014
gk747251
gk273294
gk366509
ttTi33455
gk358047
gk547755
gk491228

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00219722 2326744 2329092 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in adr-1(tm668) comparing to in N2. DESeq2, p-value < 0.05 and a fold enrichment log2fold > 0.5. WBPaper00055226:adr-1(tm668)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00219722 2326744 2329092 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
2349

1 Sequence Ontology Term