WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219735 Gene Name  linc-150
Sequence Name  ? T24D8.18 Organism  Caenorhabditis elegans
Automated Description  Enriched in neurons based on RNA-seq studies. Biotype  SO:0001641
Genetic Position  X :-15.5942± Length (nt)  ? 1364
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219735

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T24D8.18 T24D8.18 1364   X: 2369181-2370544
 

Other

0 CDSs

0 RNAi Result

29 Allele

Public Name
gk963725
WBVar01757693
WBVar01757694
WBVar00076095
WBVar00076096
WBVar00076097
WBVar00076092
WBVar00076093
WBVar00076094
WBVar01979729
WBVar01979731
WBVar01979730
WBVar02026781
snx3413
otn6877
gk381087
gk688948
gk640730
gk314103
gk576319
gk701499
gk692043
gk584087
gk575871
gk817113
gk716104
gk390385
WBVar02048631
WBVar01619398

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00219735 2369181 2370544 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrX_2369140..2369180   41 X: 2369140-2369180 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. DESEQ2, fold change > 2 and FDR < 0.01. WBPaper00062103:neuron_enriched

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00219735 2369181 2370544 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1364

1 Sequence Ontology Term