WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F47G3.1.1 Sequence Name  F47G3.1.1
Length (nt)  2916   Chromosome Location  X: 2385753-2392887
Chromosome . Primary Identifier  X Chromosome Location . Start  2385753
Chromosome Location . End  2392887 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F47G3.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018576 F47G3.1 F47G3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F47G3.1 F47G3.1 2571   X: 2385808-2385954

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F47G3.1.1 2385753 2392887 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon225541   202   X: 2385753-2385954 Caenorhabditis elegans
Exon225542   249   X: 2387190-2387438 Caenorhabditis elegans
Exon225543   111   X: 2387490-2387600 Caenorhabditis elegans
Exon225544   169   X: 2387649-2387817 Caenorhabditis elegans
Exon225545   284   X: 2388575-2388858 Caenorhabditis elegans
Exon225546   92   X: 2388908-2388999 Caenorhabditis elegans
Exon225549   91   X: 2389480-2389570 Caenorhabditis elegans
Exon225550   318   X: 2389613-2389930 Caenorhabditis elegans
Exon225551   339   X: 2389979-2390317 Caenorhabditis elegans
Exon225552   96   X: 2390501-2390596 Caenorhabditis elegans
Exon225553   81   X: 2390745-2390825 Caenorhabditis elegans
Exon225554   133   X: 2390875-2391007 Caenorhabditis elegans
Exon225555   80   X: 2391097-2391176 Caenorhabditis elegans
Exon225556   90   X: 2392102-2392191 Caenorhabditis elegans
Exon225557   67   X: 2392235-2392301 Caenorhabditis elegans
Exon225558   514   X: 2392374-2392887 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F47G3.1.1 2385753 2392887 1

1 Sequence

Length
2916

1 Sequence Ontology Term

Identifier Name Description
transcript