WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T07D1.1a.1 Sequence Name  T07D1.1a.1
Length (nt)  2291   Chromosome Location  X: 2419956-2427504
Chromosome . Primary Identifier  X Chromosome Location . Start  2419956
Chromosome Location . End  2427504 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T07D1.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001551 gcy-31 T07D1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T07D1.1a T07D1.1a 1785   X: 2420462-2420629

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T07D1.1a.1 2419956 2427504 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon225659   674   X: 2419956-2420629 Caenorhabditis elegans
Exon225662   138   X: 2421322-2421459 Caenorhabditis elegans
Exon225666   99   X: 2421516-2421614 Caenorhabditis elegans
Exon225670   270   X: 2421662-2421931 Caenorhabditis elegans
Exon225674   147   X: 2421992-2422138 Caenorhabditis elegans
Exon225678   147   X: 2422184-2422330 Caenorhabditis elegans
Exon225682   130   X: 2422381-2422510 Caenorhabditis elegans
Exon225695   116   X: 2423957-2424072 Caenorhabditis elegans
Exon225699   169   X: 2424127-2424295 Caenorhabditis elegans
Exon225704   149   X: 2426577-2426725 Caenorhabditis elegans
Exon225708   174   X: 2426836-2427009 Caenorhabditis elegans
Exon225711   78   X: 2427427-2427504 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T07D1.1a.1 2419956 2427504 -1

1 Sequence

Length
2291

1 Sequence Ontology Term

Identifier Name Description
transcript