WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T07D1.1d.1 Sequence Name  T07D1.1d.1
Length (nt)  1998   Chromosome Location  X: 2420462-2426976
Chromosome . Primary Identifier  X Chromosome Location . Start  2420462
Chromosome Location . End  2426976 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T07D1.1d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001551 gcy-31 T07D1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T07D1.1d T07D1.1d 1998   X: 2420462-2420629

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T07D1.1d.1 2420462 2426976 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon225660   168   X: 2420462-2420629 Caenorhabditis elegans
Exon225665   138   X: 2421322-2421459 Caenorhabditis elegans
Exon225669   99   X: 2421516-2421614 Caenorhabditis elegans
Exon225673   270   X: 2421662-2421931 Caenorhabditis elegans
Exon225677   147   X: 2421992-2422138 Caenorhabditis elegans
Exon225681   147   X: 2422184-2422330 Caenorhabditis elegans
Exon225685   130   X: 2422381-2422510 Caenorhabditis elegans
Exon225688   115   X: 2422560-2422674 Caenorhabditis elegans
Exon225691   103   X: 2422719-2422821 Caenorhabditis elegans
Exon225694   106   X: 2423575-2423680 Caenorhabditis elegans
Exon225698   116   X: 2423957-2424072 Caenorhabditis elegans
Exon225702   169   X: 2424127-2424295 Caenorhabditis elegans
Exon225706   149   X: 2426577-2426725 Caenorhabditis elegans
Exon225707   141   X: 2426836-2426976 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T07D1.1d.1 2420462 2426976 -1

1 Sequence

Length
1998

1 Sequence Ontology Term

Identifier Name Description
transcript