WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T07D1.1c.1 Sequence Name  T07D1.1c.1
Length (nt)  1737   Chromosome Location  X: 2420462-2427455
Chromosome . Primary Identifier  X Chromosome Location . Start  2420462
Chromosome Location . End  2427455 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T07D1.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001551 gcy-31 T07D1.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T07D1.1c T07D1.1c 1737   X: 2420462-2420629

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T07D1.1c.1 2420462 2427455 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon225661   168   X: 2420462-2420629 Caenorhabditis elegans
Exon225664   138   X: 2421322-2421459 Caenorhabditis elegans
Exon225668   99   X: 2421516-2421614 Caenorhabditis elegans
Exon225672   270   X: 2421662-2421931 Caenorhabditis elegans
Exon225676   147   X: 2421992-2422138 Caenorhabditis elegans
Exon225680   147   X: 2422184-2422330 Caenorhabditis elegans
Exon225684   130   X: 2422381-2422510 Caenorhabditis elegans
Exon225687   115   X: 2422560-2422674 Caenorhabditis elegans
Exon225690   103   X: 2422719-2422821 Caenorhabditis elegans
Exon225693   106   X: 2423575-2423680 Caenorhabditis elegans
Exon225697   116   X: 2423957-2424072 Caenorhabditis elegans
Exon225701   169   X: 2424127-2424295 Caenorhabditis elegans
Exon225710   29   X: 2427427-2427455 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T07D1.1c.1 2420462 2427455 -1

1 Sequence

Length
1737

1 Sequence Ontology Term

Identifier Name Description
transcript