WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K02E10.8c.1 Sequence Name  K02E10.8c.1
Length (nt)  2601   Chromosome Location  X: 2509317-2515324
Chromosome . Primary Identifier  X Chromosome Location . Start  2509317
Chromosome Location . End  2515324 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K02E10.8c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006365 syg-1 K02E10.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K02E10.8c K02E10.8c 2184   X: 2509719-2509861

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K02E10.8c.1 2509317 2515324 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon225910   545   X: 2509317-2509861 Caenorhabditis elegans
Exon225912   178   X: 2509927-2510104 Caenorhabditis elegans
Exon225916   104   X: 2510279-2510382 Caenorhabditis elegans
Exon225919   129   X: 2510434-2510562 Caenorhabditis elegans
Exon225924   160   X: 2511058-2511217 Caenorhabditis elegans
Exon225927   152   X: 2511263-2511414 Caenorhabditis elegans
Exon225930   107   X: 2511463-2511569 Caenorhabditis elegans
Exon225933   148   X: 2511627-2511774 Caenorhabditis elegans
Exon225936   109   X: 2511890-2511998 Caenorhabditis elegans
Exon225939   186   X: 2512123-2512308 Caenorhabditis elegans
Exon225942   73   X: 2512362-2512434 Caenorhabditis elegans
Exon225945   121   X: 2513296-2513416 Caenorhabditis elegans
Exon225948   198   X: 2513464-2513661 Caenorhabditis elegans
Exon225953   106   X: 2514162-2514267 Caenorhabditis elegans
Exon225956   123   X: 2514839-2514961 Caenorhabditis elegans
Exon225959   162   X: 2515163-2515324 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K02E10.8c.1 2509317 2515324 -1

1 Sequence

Length
2601

1 Sequence Ontology Term

Identifier Name Description
transcript