WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52H2.7.1 Sequence Name  F52H2.7.1
Length (nt)  2454   Chromosome Location  X: 2566543-2572653
Chromosome . Primary Identifier  X Chromosome Location . Start  2566543
Chromosome Location . End  2572653 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52H2.7.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018719 ccd-5 F52H2.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52H2.7 F52H2.7 2313   X: 2566673-2566892

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52H2.7.1 2566543 2572653 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226059   350   X: 2566543-2566892 Caenorhabditis elegans
Exon226060   104   X: 2567602-2567705 Caenorhabditis elegans
Exon226061   108   X: 2567756-2567863 Caenorhabditis elegans
Exon226062   70   X: 2567910-2567979 Caenorhabditis elegans
Exon226063   161   X: 2568031-2568191 Caenorhabditis elegans
Exon226064   168   X: 2569200-2569367 Caenorhabditis elegans
Exon226065   154   X: 2569430-2569583 Caenorhabditis elegans
Exon226066   134   X: 2570417-2570550 Caenorhabditis elegans
Exon226067   164   X: 2570650-2570813 Caenorhabditis elegans
Exon226068   182   X: 2570858-2571039 Caenorhabditis elegans
Exon226069   159   X: 2571094-2571252 Caenorhabditis elegans
Exon226070   120   X: 2571299-2571418 Caenorhabditis elegans
Exon226071   97   X: 2571464-2571560 Caenorhabditis elegans
Exon226072   230   X: 2571945-2572174 Caenorhabditis elegans
Exon226073   155   X: 2572348-2572502 Caenorhabditis elegans
Exon226074   98   X: 2572556-2572653 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52H2.7.1 2566543 2572653 -1

1 Sequence

Length
2454

1 Sequence Ontology Term

Identifier Name Description
transcript