WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54G2.1e.1 Sequence Name  F54G2.1e.1
Length (nt)  4045   Chromosome Location  X: 2621272-2640348
Chromosome . Primary Identifier  X Chromosome Location . Start  2621272
Chromosome Location . End  2640348 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54G2.1e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018837 F54G2.1 F54G2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54G2.1e F54G2.1e 3558   X: 2621745-2621830

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F54G2.1e.1 2621272 2640348 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226146   559   X: 2621272-2621830 Caenorhabditis elegans
Exon226153   76   X: 2621881-2621956 Caenorhabditis elegans
Exon226158   112   X: 2622476-2622587 Caenorhabditis elegans
Exon226163   163   X: 2622634-2622796 Caenorhabditis elegans
Exon226168   82   X: 2622844-2622925 Caenorhabditis elegans
Exon226175   84   X: 2623625-2623708 Caenorhabditis elegans
Exon226180   240   X: 2624173-2624412 Caenorhabditis elegans
Exon226185   195   X: 2624460-2624654 Caenorhabditis elegans
Exon226190   114   X: 2624696-2624809 Caenorhabditis elegans
Exon226195   186   X: 2624860-2625045 Caenorhabditis elegans
Exon226200   69   X: 2625091-2625159 Caenorhabditis elegans
Exon226205   121   X: 2625207-2625327 Caenorhabditis elegans
Exon226210   690   X: 2625382-2626071 Caenorhabditis elegans
Exon226215   480   X: 2626513-2626992 Caenorhabditis elegans
Exon226220   215   X: 2627043-2627257 Caenorhabditis elegans
Exon226225   119   X: 2627428-2627546 Caenorhabditis elegans
Exon226230   67   X: 2627602-2627668 Caenorhabditis elegans
Exon226235   156   X: 2627945-2628100 Caenorhabditis elegans
Exon226240   127   X: 2629547-2629673 Caenorhabditis elegans
Exon226248   190   X: 2640159-2640348 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F54G2.1e.1 2621272 2640348 -1

1 Sequence

Length
4045

1 Sequence Ontology Term

Identifier Name Description
transcript