WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54G2.1d.1 Sequence Name  F54G2.1d.1
Length (nt)  4053   Chromosome Location  X: 2621274-2640334
Chromosome . Primary Identifier  X Chromosome Location . Start  2621274
Chromosome Location . End  2640334 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54G2.1d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018837 F54G2.1 F54G2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54G2.1d F54G2.1d 3582   X: 2621745-2621830

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F54G2.1d.1 2621274 2640334 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

21 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226149   557   X: 2621274-2621830 Caenorhabditis elegans
Exon226152   76   X: 2621881-2621956 Caenorhabditis elegans
Exon226157   112   X: 2622476-2622587 Caenorhabditis elegans
Exon226162   163   X: 2622634-2622796 Caenorhabditis elegans
Exon226167   82   X: 2622844-2622925 Caenorhabditis elegans
Exon226171   24   X: 2623289-2623312 Caenorhabditis elegans
Exon226174   84   X: 2623625-2623708 Caenorhabditis elegans
Exon226179   240   X: 2624173-2624412 Caenorhabditis elegans
Exon226184   195   X: 2624460-2624654 Caenorhabditis elegans
Exon226189   114   X: 2624696-2624809 Caenorhabditis elegans
Exon226194   186   X: 2624860-2625045 Caenorhabditis elegans
Exon226199   69   X: 2625091-2625159 Caenorhabditis elegans
Exon226204   121   X: 2625207-2625327 Caenorhabditis elegans
Exon226209   690   X: 2625382-2626071 Caenorhabditis elegans
Exon226214   480   X: 2626513-2626992 Caenorhabditis elegans
Exon226219   215   X: 2627043-2627257 Caenorhabditis elegans
Exon226224   119   X: 2627428-2627546 Caenorhabditis elegans
Exon226229   67   X: 2627602-2627668 Caenorhabditis elegans
Exon226234   156   X: 2627945-2628100 Caenorhabditis elegans
Exon226239   127   X: 2629547-2629673 Caenorhabditis elegans
Exon226247   176   X: 2640159-2640334 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F54G2.1d.1 2621274 2640334 -1

1 Sequence

Length
4053

1 Sequence Ontology Term

Identifier Name Description
transcript