WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54G2.1f.1 Sequence Name  F54G2.1f.1
Length (nt)  3456   Chromosome Location  X: 2621745-2630708
Chromosome . Primary Identifier  X Chromosome Location . Start  2621745
Chromosome Location . End  2630708 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54G2.1f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018837 F54G2.1 F54G2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54G2.1f F54G2.1f 3456   X: 2621745-2621830

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F54G2.1f.1 2621745 2630708 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

21 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226150   86   X: 2621745-2621830 Caenorhabditis elegans
Exon226154   76   X: 2621881-2621956 Caenorhabditis elegans
Exon226159   112   X: 2622476-2622587 Caenorhabditis elegans
Exon226164   163   X: 2622634-2622796 Caenorhabditis elegans
Exon226169   82   X: 2622844-2622925 Caenorhabditis elegans
Exon226172   24   X: 2623289-2623312 Caenorhabditis elegans
Exon226176   84   X: 2623625-2623708 Caenorhabditis elegans
Exon226181   240   X: 2624173-2624412 Caenorhabditis elegans
Exon226186   195   X: 2624460-2624654 Caenorhabditis elegans
Exon226191   114   X: 2624696-2624809 Caenorhabditis elegans
Exon226196   186   X: 2624860-2625045 Caenorhabditis elegans
Exon226201   69   X: 2625091-2625159 Caenorhabditis elegans
Exon226206   121   X: 2625207-2625327 Caenorhabditis elegans
Exon226211   690   X: 2625382-2626071 Caenorhabditis elegans
Exon226216   480   X: 2626513-2626992 Caenorhabditis elegans
Exon226221   215   X: 2627043-2627257 Caenorhabditis elegans
Exon226226   119   X: 2627428-2627546 Caenorhabditis elegans
Exon226231   67   X: 2627602-2627668 Caenorhabditis elegans
Exon226236   156   X: 2627945-2628100 Caenorhabditis elegans
Exon226241   127   X: 2629547-2629673 Caenorhabditis elegans
Exon226243   50   X: 2630659-2630708 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F54G2.1f.1 2621745 2630708 -1

1 Sequence

Length
3456

1 Sequence Ontology Term

Identifier Name Description
transcript