WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T02C5.3e.1 Sequence Name  T02C5.3e.1
Length (nt)  1731   Chromosome Location  X: 2698598-2705663
Chromosome . Primary Identifier  X Chromosome Location . Start  2698598
Chromosome Location . End  2705663 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T02C5.3e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020160 igcm-3 T02C5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T02C5.3e T02C5.3e 1731   X: 2698598-2698756

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T02C5.3e.1 2698598 2705663 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226337   159   X: 2698598-2698756 Caenorhabditis elegans
Exon226344   79   X: 2699331-2699409 Caenorhabditis elegans
Exon226353   46   X: 2699462-2699507 Caenorhabditis elegans
Exon226364   140   X: 2700452-2700591 Caenorhabditis elegans
Exon226371   158   X: 2700990-2701147 Caenorhabditis elegans
Exon226378   542   X: 2701768-2702309 Caenorhabditis elegans
Exon226385   128   X: 2702365-2702492 Caenorhabditis elegans
Exon226392   132   X: 2702536-2702667 Caenorhabditis elegans
Exon226399   109   X: 2702928-2703036 Caenorhabditis elegans
Exon226408   79   X: 2703128-2703206 Caenorhabditis elegans
Exon226410   159   X: 2705505-2705663 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T02C5.3e.1 2698598 2705663 -1

1 Sequence

Length
1731

1 Sequence Ontology Term

Identifier Name Description
transcript