WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T02C5.5c.1 Sequence Name  T02C5.5c.1
Length (nt)  6441   Chromosome Location  X: 2710923-2725632
Chromosome . Primary Identifier  X Chromosome Location . Start  2710923
Chromosome Location . End  2725632 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T02C5.5c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006742 unc-2 T02C5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T02C5.5c T02C5.5c 5736   X: 2711628-2711798

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5c.1 2710923 2725632 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

27 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226419   876   X: 2710923-2711798 Caenorhabditis elegans
Exon226437   185   X: 2712355-2712539 Caenorhabditis elegans
Exon226447   150   X: 2712582-2712731 Caenorhabditis elegans
Exon226461   291   X: 2712787-2713077 Caenorhabditis elegans
Exon226475   121   X: 2713276-2713396 Caenorhabditis elegans
Exon226488   54   X: 2714634-2714687 Caenorhabditis elegans
Exon226494   88   X: 2715092-2715179 Caenorhabditis elegans
Exon226508   101   X: 2716008-2716108 Caenorhabditis elegans
Exon226522   213   X: 2716157-2716369 Caenorhabditis elegans
Exon226540   89   X: 2716915-2717003 Caenorhabditis elegans
Exon226555   311   X: 2717108-2717418 Caenorhabditis elegans
Exon226570   653   X: 2717465-2718117 Caenorhabditis elegans
Exon226585   783   X: 2718804-2719586 Caenorhabditis elegans
Exon226600   106   X: 2719637-2719742 Caenorhabditis elegans
Exon226615   107   X: 2720170-2720276 Caenorhabditis elegans
Exon226630   287   X: 2720819-2721105 Caenorhabditis elegans
Exon226645   213   X: 2721155-2721367 Caenorhabditis elegans
Exon226660   121   X: 2721418-2721538 Caenorhabditis elegans
Exon226675   428   X: 2721584-2722011 Caenorhabditis elegans
Exon226690   128   X: 2722059-2722186 Caenorhabditis elegans
Exon226705   58   X: 2722642-2722699 Caenorhabditis elegans
Exon226724   203   X: 2723259-2723461 Caenorhabditis elegans
Exon226735   90   X: 2724083-2724172 Caenorhabditis elegans
Exon226750   193   X: 2724219-2724411 Caenorhabditis elegans
Exon226765   273   X: 2724464-2724736 Caenorhabditis elegans
Exon226780   128   X: 2724824-2724951 Caenorhabditis elegans
Exon226794   191   X: 2725442-2725632 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5c.1 2710923 2725632 -1

1 Sequence

Length
6441

1 Sequence Ontology Term

Identifier Name Description
transcript