WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T02C5.5i.1 Sequence Name  T02C5.5i.1
Length (nt)  6150   Chromosome Location  X: 2711628-2736311
Chromosome . Primary Identifier  X Chromosome Location . Start  2711628
Chromosome Location . End  2736311 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T02C5.5i.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006742 unc-2 T02C5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T02C5.5i T02C5.5i 6150   X: 2711628-2711798

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5i.1 2711628 2736311 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

28 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226423   171   X: 2711628-2711798 Caenorhabditis elegans
Exon226439   185   X: 2712355-2712539 Caenorhabditis elegans
Exon226451   150   X: 2712582-2712731 Caenorhabditis elegans
Exon226465   291   X: 2712787-2713077 Caenorhabditis elegans
Exon226479   121   X: 2713276-2713396 Caenorhabditis elegans
Exon226498   88   X: 2715092-2715179 Caenorhabditis elegans
Exon226512   101   X: 2716008-2716108 Caenorhabditis elegans
Exon226526   213   X: 2716157-2716369 Caenorhabditis elegans
Exon226544   89   X: 2716915-2717003 Caenorhabditis elegans
Exon226559   311   X: 2717108-2717418 Caenorhabditis elegans
Exon226574   653   X: 2717465-2718117 Caenorhabditis elegans
Exon226589   783   X: 2718804-2719586 Caenorhabditis elegans
Exon226604   106   X: 2719637-2719742 Caenorhabditis elegans
Exon226619   107   X: 2720170-2720276 Caenorhabditis elegans
Exon226634   287   X: 2720819-2721105 Caenorhabditis elegans
Exon226649   213   X: 2721155-2721367 Caenorhabditis elegans
Exon226664   121   X: 2721418-2721538 Caenorhabditis elegans
Exon226679   428   X: 2721584-2722011 Caenorhabditis elegans
Exon226694   128   X: 2722059-2722186 Caenorhabditis elegans
Exon226709   58   X: 2722642-2722699 Caenorhabditis elegans
Exon226728   203   X: 2723259-2723461 Caenorhabditis elegans
Exon226739   90   X: 2724083-2724172 Caenorhabditis elegans
Exon226754   193   X: 2724219-2724411 Caenorhabditis elegans
Exon226769   273   X: 2724464-2724736 Caenorhabditis elegans
Exon226784   128   X: 2724824-2724951 Caenorhabditis elegans
Exon226799   320   X: 2725442-2725761 Caenorhabditis elegans
Exon226812   97   X: 2730538-2730634 Caenorhabditis elegans
Exon226827   242   X: 2736070-2736311 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5i.1 2711628 2736311 -1

1 Sequence

Length
6150

1 Sequence Ontology Term

Identifier Name Description
transcript