WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T02C5.5j.1 Sequence Name  T02C5.5j.1
Length (nt)  6003   Chromosome Location  X: 2711628-2743701
Chromosome . Primary Identifier  X Chromosome Location . Start  2711628
Chromosome Location . End  2743701 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T02C5.5j.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006742 unc-2 T02C5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T02C5.5j T02C5.5j 6003   X: 2711628-2711798

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5j.1 2711628 2743701 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226424   171   X: 2711628-2711798 Caenorhabditis elegans
Exon226434   179   X: 2712355-2712533 Caenorhabditis elegans
Exon226452   150   X: 2712582-2712731 Caenorhabditis elegans
Exon226466   291   X: 2712787-2713077 Caenorhabditis elegans
Exon226480   121   X: 2713276-2713396 Caenorhabditis elegans
Exon226491   54   X: 2714634-2714687 Caenorhabditis elegans
Exon226499   88   X: 2715092-2715179 Caenorhabditis elegans
Exon226513   101   X: 2716008-2716108 Caenorhabditis elegans
Exon226527   213   X: 2716157-2716369 Caenorhabditis elegans
Exon226545   89   X: 2716915-2717003 Caenorhabditis elegans
Exon226560   311   X: 2717108-2717418 Caenorhabditis elegans
Exon226575   653   X: 2717465-2718117 Caenorhabditis elegans
Exon226590   783   X: 2718804-2719586 Caenorhabditis elegans
Exon226605   106   X: 2719637-2719742 Caenorhabditis elegans
Exon226620   107   X: 2720170-2720276 Caenorhabditis elegans
Exon226635   287   X: 2720819-2721105 Caenorhabditis elegans
Exon226650   213   X: 2721155-2721367 Caenorhabditis elegans
Exon226665   121   X: 2721418-2721538 Caenorhabditis elegans
Exon226680   428   X: 2721584-2722011 Caenorhabditis elegans
Exon226695   128   X: 2722059-2722186 Caenorhabditis elegans
Exon226710   58   X: 2722642-2722699 Caenorhabditis elegans
Exon226729   203   X: 2723259-2723461 Caenorhabditis elegans
Exon226740   90   X: 2724083-2724172 Caenorhabditis elegans
Exon226755   193   X: 2724219-2724411 Caenorhabditis elegans
Exon226770   273   X: 2724464-2724736 Caenorhabditis elegans
Exon226785   128   X: 2724824-2724951 Caenorhabditis elegans
Exon226800   320   X: 2725442-2725761 Caenorhabditis elegans
Exon226813   97   X: 2730538-2730634 Caenorhabditis elegans
Exon226832   47   X: 2743655-2743701 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5j.1 2711628 2743701 -1

1 Sequence

Length
6003

1 Sequence Ontology Term

Identifier Name Description
transcript