WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T02C5.5l.1 Sequence Name  T02C5.5l.1
Length (nt)  6009   Chromosome Location  X: 2711628-2743701
Chromosome . Primary Identifier  X Chromosome Location . Start  2711628
Chromosome Location . End  2743701 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T02C5.5l.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006742 unc-2 T02C5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T02C5.5l T02C5.5l 6009   X: 2711628-2711798

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5l.1 2711628 2743701 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226426   171   X: 2711628-2711798 Caenorhabditis elegans
Exon226440   185   X: 2712355-2712539 Caenorhabditis elegans
Exon226454   150   X: 2712582-2712731 Caenorhabditis elegans
Exon226468   291   X: 2712787-2713077 Caenorhabditis elegans
Exon226482   121   X: 2713276-2713396 Caenorhabditis elegans
Exon226492   54   X: 2714634-2714687 Caenorhabditis elegans
Exon226501   88   X: 2715092-2715179 Caenorhabditis elegans
Exon226515   101   X: 2716008-2716108 Caenorhabditis elegans
Exon226529   213   X: 2716157-2716369 Caenorhabditis elegans
Exon226547   89   X: 2716915-2717003 Caenorhabditis elegans
Exon226562   311   X: 2717108-2717418 Caenorhabditis elegans
Exon226577   653   X: 2717465-2718117 Caenorhabditis elegans
Exon226592   783   X: 2718804-2719586 Caenorhabditis elegans
Exon226607   106   X: 2719637-2719742 Caenorhabditis elegans
Exon226622   107   X: 2720170-2720276 Caenorhabditis elegans
Exon226637   287   X: 2720819-2721105 Caenorhabditis elegans
Exon226652   213   X: 2721155-2721367 Caenorhabditis elegans
Exon226667   121   X: 2721418-2721538 Caenorhabditis elegans
Exon226682   428   X: 2721584-2722011 Caenorhabditis elegans
Exon226697   128   X: 2722059-2722186 Caenorhabditis elegans
Exon226712   58   X: 2722642-2722699 Caenorhabditis elegans
Exon226731   203   X: 2723259-2723461 Caenorhabditis elegans
Exon226742   90   X: 2724083-2724172 Caenorhabditis elegans
Exon226757   193   X: 2724219-2724411 Caenorhabditis elegans
Exon226772   273   X: 2724464-2724736 Caenorhabditis elegans
Exon226787   128   X: 2724824-2724951 Caenorhabditis elegans
Exon226802   320   X: 2725442-2725761 Caenorhabditis elegans
Exon226815   97   X: 2730538-2730634 Caenorhabditis elegans
Exon226834   47   X: 2743655-2743701 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5l.1 2711628 2743701 -1

1 Sequence

Length
6009

1 Sequence Ontology Term

Identifier Name Description
transcript