WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T02C5.5m.1 Sequence Name  T02C5.5m.1
Length (nt)  5955   Chromosome Location  X: 2711628-2743701
Chromosome . Primary Identifier  X Chromosome Location . Start  2711628
Chromosome Location . End  2743701 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T02C5.5m.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006742 unc-2 T02C5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T02C5.5m T02C5.5m 5955   X: 2711628-2711798

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5m.1 2711628 2743701 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

28 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226427   171   X: 2711628-2711798 Caenorhabditis elegans
Exon226441   185   X: 2712355-2712539 Caenorhabditis elegans
Exon226455   150   X: 2712582-2712731 Caenorhabditis elegans
Exon226469   291   X: 2712787-2713077 Caenorhabditis elegans
Exon226483   121   X: 2713276-2713396 Caenorhabditis elegans
Exon226502   88   X: 2715092-2715179 Caenorhabditis elegans
Exon226516   101   X: 2716008-2716108 Caenorhabditis elegans
Exon226530   213   X: 2716157-2716369 Caenorhabditis elegans
Exon226548   89   X: 2716915-2717003 Caenorhabditis elegans
Exon226563   311   X: 2717108-2717418 Caenorhabditis elegans
Exon226578   653   X: 2717465-2718117 Caenorhabditis elegans
Exon226593   783   X: 2718804-2719586 Caenorhabditis elegans
Exon226608   106   X: 2719637-2719742 Caenorhabditis elegans
Exon226623   107   X: 2720170-2720276 Caenorhabditis elegans
Exon226638   287   X: 2720819-2721105 Caenorhabditis elegans
Exon226653   213   X: 2721155-2721367 Caenorhabditis elegans
Exon226668   121   X: 2721418-2721538 Caenorhabditis elegans
Exon226683   428   X: 2721584-2722011 Caenorhabditis elegans
Exon226698   128   X: 2722059-2722186 Caenorhabditis elegans
Exon226713   58   X: 2722642-2722699 Caenorhabditis elegans
Exon226732   203   X: 2723259-2723461 Caenorhabditis elegans
Exon226743   90   X: 2724083-2724172 Caenorhabditis elegans
Exon226758   193   X: 2724219-2724411 Caenorhabditis elegans
Exon226773   273   X: 2724464-2724736 Caenorhabditis elegans
Exon226788   128   X: 2724824-2724951 Caenorhabditis elegans
Exon226803   320   X: 2725442-2725761 Caenorhabditis elegans
Exon226816   97   X: 2730538-2730634 Caenorhabditis elegans
Exon226835   47   X: 2743655-2743701 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5m.1 2711628 2743701 -1

1 Sequence

Length
5955

1 Sequence Ontology Term

Identifier Name Description
transcript