WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T02C5.5a.1 Sequence Name  T02C5.5a.1
Length (nt)  4660   Chromosome Location  X: 2716164-2725632
Chromosome . Primary Identifier  X Chromosome Location . Start  2716164
Chromosome Location . End  2725632 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T02C5.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006742 unc-2 T02C5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T02C5.5a T02C5.5a 4572   X: 2716252-2716369

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5a.1 2716164 2725632 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226535   206   X: 2716164-2716369 Caenorhabditis elegans
Exon226537   92   X: 2716565-2716656 Caenorhabditis elegans
Exon226538   89   X: 2716915-2717003 Caenorhabditis elegans
Exon226553   311   X: 2717108-2717418 Caenorhabditis elegans
Exon226568   653   X: 2717465-2718117 Caenorhabditis elegans
Exon226583   783   X: 2718804-2719586 Caenorhabditis elegans
Exon226598   106   X: 2719637-2719742 Caenorhabditis elegans
Exon226613   107   X: 2720170-2720276 Caenorhabditis elegans
Exon226628   287   X: 2720819-2721105 Caenorhabditis elegans
Exon226643   213   X: 2721155-2721367 Caenorhabditis elegans
Exon226658   121   X: 2721418-2721538 Caenorhabditis elegans
Exon226673   428   X: 2721584-2722011 Caenorhabditis elegans
Exon226688   128   X: 2722059-2722186 Caenorhabditis elegans
Exon226703   58   X: 2722642-2722699 Caenorhabditis elegans
Exon226723   203   X: 2723259-2723461 Caenorhabditis elegans
Exon226733   90   X: 2724083-2724172 Caenorhabditis elegans
Exon226748   193   X: 2724219-2724411 Caenorhabditis elegans
Exon226763   273   X: 2724464-2724736 Caenorhabditis elegans
Exon226778   128   X: 2724824-2724951 Caenorhabditis elegans
Exon226793   191   X: 2725442-2725632 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5a.1 2716164 2725632 -1

1 Sequence

Length
4660

1 Sequence Ontology Term

Identifier Name Description
transcript