WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

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mRNA :

WormMine ID  Transcript:Y71H10B.1a.2 Sequence Name  Y71H10B.1a.2
Length (nt)  2207   Chromosome Location  X: 2834205-2840292
Chromosome . Primary Identifier  X Chromosome Location . Start  2834205
Chromosome Location . End  2840292 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y71H10B.1a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022201 ntfc-1 Y71H10B.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y71H10B.1a Y71H10B.1a 1671   X: 2834614-2834739

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y71H10B.1a.2 2834205 2840292 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226963   535   X: 2834205-2834739 Caenorhabditis elegans
Exon226968   271   X: 2834960-2835230 Caenorhabditis elegans
Exon226972   95   X: 2836039-2836133 Caenorhabditis elegans
Exon226976   609   X: 2836189-2836797 Caenorhabditis elegans
Exon226980   100   X: 2836848-2836947 Caenorhabditis elegans
Exon226984   147   X: 2837000-2837146 Caenorhabditis elegans
Exon226988   94   X: 2837193-2837286 Caenorhabditis elegans
Exon226992   120   X: 2837744-2837863 Caenorhabditis elegans
Exon226997   74   X: 2837917-2837990 Caenorhabditis elegans
Exon227000   108   X: 2838546-2838653 Caenorhabditis elegans
Exon227001   54   X: 2840239-2840292 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y71H10B.1a.2 2834205 2840292 -1

1 Sequence

Length
2207

1 Sequence Ontology Term

Identifier Name Description
transcript