WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52B10.1a.1 Sequence Name  F52B10.1a.1
Length (nt)  6419   Chromosome Location  X: 2909527-2918043
Chromosome . Primary Identifier  X Chromosome Location . Start  2909527
Chromosome Location . End  2918043 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52B10.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003776 nmy-1 F52B10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52B10.1a F52B10.1a 5892   X: 2909556-2909686

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F52B10.1a.1 2909527 2918043 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon227136   160   X: 2909527-2909686 Caenorhabditis elegans
Exon227138   193   X: 2909735-2909927 Caenorhabditis elegans
Exon227140   157   X: 2909975-2910131 Caenorhabditis elegans
Exon227142   152   X: 2910189-2910340 Caenorhabditis elegans
Exon227144   21   X: 2910423-2910443 Caenorhabditis elegans
Exon227145   93   X: 2911111-2911203 Caenorhabditis elegans
Exon227147   163   X: 2911259-2911421 Caenorhabditis elegans
Exon227149   144   X: 2911889-2912032 Caenorhabditis elegans
Exon227151   474   X: 2912082-2912555 Caenorhabditis elegans
Exon227153   1121   X: 2912610-2913730 Caenorhabditis elegans
Exon227155   195   X: 2913787-2913981 Caenorhabditis elegans
Exon227157   578   X: 2914027-2914604 Caenorhabditis elegans
Exon227159   115   X: 2914751-2914865 Caenorhabditis elegans
Exon227161   312   X: 2914916-2915227 Caenorhabditis elegans
Exon227163   690   X: 2915276-2915965 Caenorhabditis elegans
Exon227165   1056   X: 2916020-2917075 Caenorhabditis elegans
Exon227167   161   X: 2917153-2917313 Caenorhabditis elegans
Exon227169   101   X: 2917357-2917457 Caenorhabditis elegans
Exon227171   533   X: 2917511-2918043 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F52B10.1a.1 2909527 2918043 1

1 Sequence

Length
6419

1 Sequence Ontology Term

Identifier Name Description
transcript