WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y41G9A.4c.1 Sequence Name  Y41G9A.4c.1
Length (nt)  3036   Chromosome Location  X: 2957935-2968158
Chromosome . Primary Identifier  X Chromosome Location . Start  2957935
Chromosome Location . End  2968158 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y41G9A.4c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021528 gbb-1 Y41G9A.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y41G9A.4c Y41G9A.4c 2568   X: 2957953-2958180

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y41G9A.4c.1 2957935 2968158 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon227235   246   X: 2957935-2958180 Caenorhabditis elegans
Exon227241   135   X: 2958705-2958839 Caenorhabditis elegans
Exon227245   98   X: 2958893-2958990 Caenorhabditis elegans
Exon227249   91   X: 2959036-2959126 Caenorhabditis elegans
Exon227253   147   X: 2959178-2959324 Caenorhabditis elegans
Exon227257   114   X: 2959639-2959752 Caenorhabditis elegans
Exon227261   182   X: 2959803-2959984 Caenorhabditis elegans
Exon227265   139   X: 2960179-2960317 Caenorhabditis elegans
Exon227269   207   X: 2960366-2960572 Caenorhabditis elegans
Exon227273   89   X: 2961338-2961426 Caenorhabditis elegans
Exon227276   139   X: 2961476-2961614 Caenorhabditis elegans
Exon227280   126   X: 2962562-2962687 Caenorhabditis elegans
Exon227285   123   X: 2966250-2966372 Caenorhabditis elegans
Exon227288   82   X: 2966418-2966499 Caenorhabditis elegans
Exon227291   213   X: 2966544-2966756 Caenorhabditis elegans
Exon227295   194   X: 2967108-2967301 Caenorhabditis elegans
Exon227299   112   X: 2967350-2967461 Caenorhabditis elegans
Exon227303   81   X: 2967511-2967591 Caenorhabditis elegans
Exon227308   518   X: 2967641-2968158 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y41G9A.4c.1 2957935 2968158 1

1 Sequence

Length
3036

1 Sequence Ontology Term

Identifier Name Description
transcript