WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y41G9A.4b.1 Sequence Name  Y41G9A.4b.1
Length (nt)  3201   Chromosome Location  X: 2957936-2968192
Chromosome . Primary Identifier  X Chromosome Location . Start  2957936
Chromosome Location . End  2968192 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y41G9A.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021528 gbb-1 Y41G9A.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y41G9A.4b Y41G9A.4b 2700   X: 2957953-2958180

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y41G9A.4b.1 2957936 2968192 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon227236   245   X: 2957936-2958180 Caenorhabditis elegans
Exon227240   135   X: 2958705-2958839 Caenorhabditis elegans
Exon227244   98   X: 2958893-2958990 Caenorhabditis elegans
Exon227248   91   X: 2959036-2959126 Caenorhabditis elegans
Exon227252   147   X: 2959178-2959324 Caenorhabditis elegans
Exon227256   114   X: 2959639-2959752 Caenorhabditis elegans
Exon227260   182   X: 2959803-2959984 Caenorhabditis elegans
Exon227264   139   X: 2960179-2960317 Caenorhabditis elegans
Exon227268   207   X: 2960366-2960572 Caenorhabditis elegans
Exon227272   89   X: 2961338-2961426 Caenorhabditis elegans
Exon227275   139   X: 2961476-2961614 Caenorhabditis elegans
Exon227279   126   X: 2962562-2962687 Caenorhabditis elegans
Exon227283   132   X: 2964157-2964288 Caenorhabditis elegans
Exon227284   123   X: 2966250-2966372 Caenorhabditis elegans
Exon227287   82   X: 2966418-2966499 Caenorhabditis elegans
Exon227290   213   X: 2966544-2966756 Caenorhabditis elegans
Exon227294   194   X: 2967108-2967301 Caenorhabditis elegans
Exon227298   112   X: 2967350-2967461 Caenorhabditis elegans
Exon227302   81   X: 2967511-2967591 Caenorhabditis elegans
Exon227309   552   X: 2967641-2968192 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y41G9A.4b.1 2957936 2968192 1

1 Sequence

Length
3201

1 Sequence Ontology Term

Identifier Name Description
transcript