WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y41G9A.4a.1 Sequence Name  Y41G9A.4a.1
Length (nt)  1678   Chromosome Location  X: 2957953-2961723
Chromosome . Primary Identifier  X Chromosome Location . Start  2957953
Chromosome Location . End  2961723 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y41G9A.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021528 gbb-1 Y41G9A.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y41G9A.4a Y41G9A.4a 1590   X: 2957953-2958180

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y41G9A.4a.1 2957953 2961723 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon227237   228   X: 2957953-2958180 Caenorhabditis elegans
Exon227239   135   X: 2958705-2958839 Caenorhabditis elegans
Exon227243   98   X: 2958893-2958990 Caenorhabditis elegans
Exon227247   91   X: 2959036-2959126 Caenorhabditis elegans
Exon227251   147   X: 2959178-2959324 Caenorhabditis elegans
Exon227255   114   X: 2959639-2959752 Caenorhabditis elegans
Exon227259   182   X: 2959803-2959984 Caenorhabditis elegans
Exon227263   139   X: 2960179-2960317 Caenorhabditis elegans
Exon227267   207   X: 2960366-2960572 Caenorhabditis elegans
Exon227271   89   X: 2961338-2961426 Caenorhabditis elegans
Exon227278   248   X: 2961476-2961723 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y41G9A.4a.1 2957953 2961723 1

1 Sequence

Length
1678

1 Sequence Ontology Term

Identifier Name Description
transcript