WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52E4.4.1 Sequence Name  F52E4.4.1
Length (nt)  1741   Chromosome Location  X: 3081125-3085401
Chromosome . Primary Identifier  X Chromosome Location . Start  3081125
Chromosome Location . End  3085401 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52E4.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006670 twk-16 F52E4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52E4.4 F52E4.4 1668   X: 3081133-3081186

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52E4.4.1 3081125 3085401 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon227579   62   X: 3081125-3081186 Caenorhabditis elegans
Exon227581   153   X: 3082598-3082750 Caenorhabditis elegans
Exon227582   89   X: 3082865-3082953 Caenorhabditis elegans
Exon227583   68   X: 3083565-3083632 Caenorhabditis elegans
Exon227584   143   X: 3083674-3083816 Caenorhabditis elegans
Exon227585   304   X: 3083864-3084167 Caenorhabditis elegans
Exon227586   91   X: 3084215-3084305 Caenorhabditis elegans
Exon227587   112   X: 3084364-3084475 Caenorhabditis elegans
Exon227588   152   X: 3084529-3084680 Caenorhabditis elegans
Exon227589   275   X: 3084741-3085015 Caenorhabditis elegans
Exon227590   109   X: 3085065-3085173 Caenorhabditis elegans
Exon227591   183   X: 3085219-3085401 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52E4.4.1 3081125 3085401 1

1 Sequence

Length
1741

1 Sequence Ontology Term

Identifier Name Description
transcript