WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K10B3.6d.1 Sequence Name  K10B3.6d.1
Length (nt)  2073   Chromosome Location  X: 3106634-3110615
Chromosome . Primary Identifier  X Chromosome Location . Start  3106634
Chromosome Location . End  3110615 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K10B3.6d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019612 gpcp-1 K10B3.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K10B3.6d K10B3.6d 2073   X: 3106634-3106769

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:K10B3.6d.1 3106634 3110615 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon227647   136   X: 3106634-3106769 Caenorhabditis elegans
Exon227650   131   X: 3106816-3106946 Caenorhabditis elegans
Exon227652   93   X: 3107795-3107887 Caenorhabditis elegans
Exon227654   76   X: 3107937-3108012 Caenorhabditis elegans
Exon227656   131   X: 3108247-3108377 Caenorhabditis elegans
Exon227658   216   X: 3108425-3108640 Caenorhabditis elegans
Exon227660   123   X: 3108691-3108813 Caenorhabditis elegans
Exon227663   94   X: 3108931-3109024 Caenorhabditis elegans
Exon227665   145   X: 3109069-3109213 Caenorhabditis elegans
Exon227668   139   X: 3109257-3109395 Caenorhabditis elegans
Exon227671   114   X: 3109449-3109562 Caenorhabditis elegans
Exon227674   69   X: 3109620-3109688 Caenorhabditis elegans
Exon227675   78   X: 3109804-3109881 Caenorhabditis elegans
Exon227678   158   X: 3109942-3110099 Caenorhabditis elegans
Exon227681   98   X: 3110145-3110242 Caenorhabditis elegans
Exon227684   126   X: 3110303-3110428 Caenorhabditis elegans
Exon227686   146   X: 3110470-3110615 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:K10B3.6d.1 3106634 3110615 -1

1 Sequence

Length
2073

1 Sequence Ontology Term

Identifier Name Description
transcript