WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K10B3.10b.1 Sequence Name  K10B3.10b.1
Length (nt)  7804   Chromosome Location  X: 3117439-3127061
Chromosome . Primary Identifier  X Chromosome Location . Start  3117439
Chromosome Location . End  3127061 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K10B3.10b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004951 spc-1 K10B3.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K10B3.10b K10B3.10b 7299   X: 3117944-3118072

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K10B3.10b.1 3117439 3127061 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon227701   634   X: 3117439-3118072 Caenorhabditis elegans
Exon227704   148   X: 3118129-3118276 Caenorhabditis elegans
Exon227706   303   X: 3118323-3118625 Caenorhabditis elegans
Exon227708   143   X: 3118678-3118820 Caenorhabditis elegans
Exon227710   577   X: 3118869-3119445 Caenorhabditis elegans
Exon227712   2466   X: 3119499-3121964 Caenorhabditis elegans
Exon227714   206   X: 3122014-3122219 Caenorhabditis elegans
Exon227715   15   X: 3122513-3122527 Caenorhabditis elegans
Exon227717   156   X: 3122581-3122736 Caenorhabditis elegans
Exon227719   1161   X: 3122781-3123941 Caenorhabditis elegans
Exon227721   1581   X: 3123985-3125565 Caenorhabditis elegans
Exon227723   126   X: 3125618-3125743 Caenorhabditis elegans
Exon227725   85   X: 3126721-3126805 Caenorhabditis elegans
Exon227726   203   X: 3126859-3127061 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K10B3.10b.1 3117439 3127061 -1

1 Sequence

Length
7804

1 Sequence Ontology Term

Identifier Name Description
transcript