WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K10B3.10a.1 Sequence Name  K10B3.10a.1
Length (nt)  7807   Chromosome Location  X: 3117439-3127079
Chromosome . Primary Identifier  X Chromosome Location . Start  3117439
Chromosome Location . End  3127079 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K10B3.10a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004951 spc-1 K10B3.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K10B3.10a K10B3.10a 7284   X: 3117944-3118072

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K10B3.10a.1 3117439 3127079 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon227702   634   X: 3117439-3118072 Caenorhabditis elegans
Exon227703   148   X: 3118129-3118276 Caenorhabditis elegans
Exon227705   303   X: 3118323-3118625 Caenorhabditis elegans
Exon227707   143   X: 3118678-3118820 Caenorhabditis elegans
Exon227709   577   X: 3118869-3119445 Caenorhabditis elegans
Exon227711   2466   X: 3119499-3121964 Caenorhabditis elegans
Exon227713   206   X: 3122014-3122219 Caenorhabditis elegans
Exon227716   156   X: 3122581-3122736 Caenorhabditis elegans
Exon227718   1161   X: 3122781-3123941 Caenorhabditis elegans
Exon227720   1581   X: 3123985-3125565 Caenorhabditis elegans
Exon227722   126   X: 3125618-3125743 Caenorhabditis elegans
Exon227724   85   X: 3126721-3126805 Caenorhabditis elegans
Exon227727   221   X: 3126859-3127079 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K10B3.10a.1 3117439 3127079 -1

1 Sequence

Length
7807

1 Sequence Ontology Term

Identifier Name Description
transcript