WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56E3.3b.1 Sequence Name  F56E3.3b.1
Length (nt)  5052   Chromosome Location  X: 3171420-3178701
Chromosome . Primary Identifier  X Chromosome Location . Start  3171420
Chromosome Location . End  3178701 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56E3.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002217 klp-4 F56E3.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56E3.3b F56E3.3b 4731   X: 3171702-3171730

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F56E3.3b.1 3171420 3178701 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

24 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon227784   311   X: 3171420-3171730 Caenorhabditis elegans
Exon227787   139   X: 3171815-3171953 Caenorhabditis elegans
Exon227789   63   X: 3172006-3172068 Caenorhabditis elegans
Exon227791   74   X: 3172117-3172190 Caenorhabditis elegans
Exon227792   45   X: 3172542-3172586 Caenorhabditis elegans
Exon227794   61   X: 3173070-3173130 Caenorhabditis elegans
Exon227796   168   X: 3173204-3173371 Caenorhabditis elegans
Exon227798   171   X: 3173414-3173584 Caenorhabditis elegans
Exon227800   174   X: 3173629-3173802 Caenorhabditis elegans
Exon227802   283   X: 3173851-3174133 Caenorhabditis elegans
Exon227804   653   X: 3174183-3174835 Caenorhabditis elegans
Exon227806   300   X: 3174884-3175183 Caenorhabditis elegans
Exon227808   184   X: 3175234-3175417 Caenorhabditis elegans
Exon227810   321   X: 3175468-3175788 Caenorhabditis elegans
Exon227812   215   X: 3175846-3176060 Caenorhabditis elegans
Exon227814   359   X: 3176134-3176492 Caenorhabditis elegans
Exon227816   100   X: 3176546-3176645 Caenorhabditis elegans
Exon227818   571   X: 3176694-3177264 Caenorhabditis elegans
Exon227820   248   X: 3177545-3177792 Caenorhabditis elegans
Exon227822   88   X: 3177846-3177933 Caenorhabditis elegans
Exon227824   110   X: 3177987-3178096 Caenorhabditis elegans
Exon227826   235   X: 3178173-3178407 Caenorhabditis elegans
Exon227828   73   X: 3178464-3178536 Caenorhabditis elegans
Exon227830   106   X: 3178596-3178701 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F56E3.3b.1 3171420 3178701 -1

1 Sequence

Length
5052

1 Sequence Ontology Term

Identifier Name Description
transcript