WormMine: Gene WBGene00199034

• WormBase Gene ID: WBGene00199034
• Gene Name: F56E3.15
• Sequence Name: F56E3.15
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in AVK based on RNA-seq studies. Is affected by lpd-3 based on RNA-seq studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 362

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00199034

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:F56E3.15	F56E3.15	362	X: 3200688-3201049

Other

0 CDSs

0 RNAi Result

9 Allele

• gk963725
• gk399128
• gk455183
• WBVar00076969
• gk275273
• gk551827
• gk929486
• gk594720
• gk677489

1 Chromosome

• WormBase ID: X
• Organism: Caenorhabditis elegans
• Length (nt): 17718942

1 Chromosome Location

• Feature . Primary Identifier: WBGene00199034
• Start: 3200688
• End: 3201049
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrX_3201050..3201082
• Length (nt): 33
• Chromosome Location: X: 3201050-3201082
• Organism: Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts significantly enriched in AVK neurons comparing to all cell types at L1 larva stage.	edgeR, FDR < 0.001, fold change > 2.	WBPaper00055565:AVK_enriched
	Transcripts that showed significantly decreased expression in lpd-3(ok2138) comparing to in N2 animals.	DESeq2, fold change > 4, FDR < 0.05.	WBPaper00064661:lpd-3(ok2138)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00199034
• Start: 3200688
• End: 3201049
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 362

1 Sequence Ontology Term