WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F28B4.2a.1 Sequence Name  F28B4.2a.1
Length (nt)  3163   Chromosome Location  X: 3210470-3220367
Chromosome . Primary Identifier  X Chromosome Location . Start  3210470
Chromosome Location . End  3220367 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F28B4.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017891 rgl-1 F28B4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F28B4.2a F28B4.2a 2583   X: 3210976-3211096

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F28B4.2a.1 3210470 3220367 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon227868   627   X: 3210470-3211096 Caenorhabditis elegans
Exon227870   194   X: 3211140-3211333 Caenorhabditis elegans
Exon227872   237   X: 3211385-3211621 Caenorhabditis elegans
Exon227874   448   X: 3212289-3212736 Caenorhabditis elegans
Exon227876   531   X: 3212795-3213325 Caenorhabditis elegans
Exon227878   311   X: 3213388-3213698 Caenorhabditis elegans
Exon227880   340   X: 3213748-3214087 Caenorhabditis elegans
Exon227883   69   X: 3214930-3214998 Caenorhabditis elegans
Exon227885   101   X: 3215058-3215158 Caenorhabditis elegans
Exon227887   126   X: 3215214-3215339 Caenorhabditis elegans
Exon227893   179   X: 3220189-3220367 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F28B4.2a.1 3210470 3220367 -1

1 Sequence

Length
3163

1 Sequence Ontology Term

Identifier Name Description
transcript