WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F28B4.2b.1 Sequence Name  F28B4.2b.1
Length (nt)  3144   Chromosome Location  X: 3210475-3220293
Chromosome . Primary Identifier  X Chromosome Location . Start  3210475
Chromosome Location . End  3220293 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F28B4.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017891 rgl-1 F28B4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F28B4.2b F28B4.2b 2643   X: 3210976-3211096

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F28B4.2b.1 3210475 3220293 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon227869   622   X: 3210475-3211096 Caenorhabditis elegans
Exon227871   194   X: 3211140-3211333 Caenorhabditis elegans
Exon227873   237   X: 3211385-3211621 Caenorhabditis elegans
Exon227875   448   X: 3212289-3212736 Caenorhabditis elegans
Exon227877   531   X: 3212795-3213325 Caenorhabditis elegans
Exon227879   311   X: 3213388-3213698 Caenorhabditis elegans
Exon227881   340   X: 3213748-3214087 Caenorhabditis elegans
Exon227884   69   X: 3214930-3214998 Caenorhabditis elegans
Exon227886   101   X: 3215058-3215158 Caenorhabditis elegans
Exon227888   126   X: 3215214-3215339 Caenorhabditis elegans
Exon227889   60   X: 3215439-3215498 Caenorhabditis elegans
Exon227892   105   X: 3220189-3220293 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F28B4.2b.1 3210475 3220293 -1

1 Sequence

Length
3144

1 Sequence Ontology Term

Identifier Name Description
transcript