WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F28B4.3.1 Sequence Name  F28B4.3.1
Length (nt)  6742   Chromosome Location  X: 3227501-3235408
Chromosome . Primary Identifier  X Chromosome Location . Start  3227501
Chromosome Location . End  3235408 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F28B4.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017892 F28B4.3 F28B4.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F28B4.3 F28B4.3 6690   X: 3227551-3227584

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F28B4.3.1 3227501 3235408 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

23 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon227916   84   X: 3227501-3227584 Caenorhabditis elegans
Exon227917   204   X: 3227632-3227835 Caenorhabditis elegans
Exon227918   317   X: 3227882-3228198 Caenorhabditis elegans
Exon227919   84   X: 3228245-3228328 Caenorhabditis elegans
Exon227920   182   X: 3228374-3228555 Caenorhabditis elegans
Exon227921   157   X: 3228599-3228755 Caenorhabditis elegans
Exon227922   344   X: 3228801-3229144 Caenorhabditis elegans
Exon227923   187   X: 3229191-3229377 Caenorhabditis elegans
Exon227924   132   X: 3229422-3229553 Caenorhabditis elegans
Exon227925   139   X: 3229605-3229743 Caenorhabditis elegans
Exon227926   118   X: 3229790-3229907 Caenorhabditis elegans
Exon227927   189   X: 3229951-3230139 Caenorhabditis elegans
Exon227928   2809   X: 3230191-3232999 Caenorhabditis elegans
Exon227929   144   X: 3233044-3233187 Caenorhabditis elegans
Exon227930   121   X: 3233241-3233361 Caenorhabditis elegans
Exon227931   118   X: 3233417-3233534 Caenorhabditis elegans
Exon227932   192   X: 3233626-3233817 Caenorhabditis elegans
Exon227933   72   X: 3233861-3233932 Caenorhabditis elegans
Exon227934   171   X: 3234077-3234247 Caenorhabditis elegans
Exon227935   61   X: 3234293-3234353 Caenorhabditis elegans
Exon227936   623   X: 3234398-3235020 Caenorhabditis elegans
Exon227937   112   X: 3235070-3235181 Caenorhabditis elegans
Exon227938   182   X: 3235227-3235408 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F28B4.3.1 3227501 3235408 -1

1 Sequence

Length
6742

1 Sequence Ontology Term

Identifier Name Description
transcript