WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F40F4.6a Sequence Name  F40F4.6a
Length (nt)  6645   Chromosome Location  X: 3235911-3235944
Chromosome . Primary Identifier  X Chromosome Location . Start  3235911
Chromosome Location . End  3235944
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F40F4.6a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE47861 IRG-7, isoform a 243.4 2214 Caenorhabditis elegans
 

Other

8 RNAi

WormBase ID
WBRNAi00068256
WBRNAi00067931
WBRNAi00000618
WBRNAi00046869
WBRNAi00014660
WBRNAi00032034
WBRNAi00025454
WBRNAi00027328

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F40F4.6a 3235911 3235944 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018237 irg-7 F40F4.6 Caenorhabditis elegans

23 Locations


Feature . Primary Identifier
Start End Strand
CDS:F40F4.6a 3235911 3235944 -1
CDS:F40F4.6a 3235992 3236195 -1
CDS:F40F4.6a 3236239 3236555 -1
CDS:F40F4.6a 3236600 3236683 -1
CDS:F40F4.6a 3236730 3236875 -1
CDS:F40F4.6a 3236919 3237075 -1
CDS:F40F4.6a 3237137 3237480 -1
CDS:F40F4.6a 3237528 3237714 -1
CDS:F40F4.6a 3237767 3237898 -1
CDS:F40F4.6a 3237945 3238083 -1
CDS:F40F4.6a 3238129 3238246 -1
CDS:F40F4.6a 3238296 3238484 -1
CDS:F40F4.6a 3238532 3241340 -1
CDS:F40F4.6a 3241387 3241530 -1
CDS:F40F4.6a 3241577 3241697 -1
CDS:F40F4.6a 3241747 3241864 -1
CDS:F40F4.6a 3241913 3242104 -1
CDS:F40F4.6a 3242151 3242222 -1
CDS:F40F4.6a 3242270 3242440 -1
CDS:F40F4.6a 3242506 3242566 -1
CDS:F40F4.6a 3242613 3243235 -1
CDS:F40F4.6a 3243290 3243401 -1
CDS:F40F4.6a 3243454 3243624 -1

1 Sequence

Length
6645

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F40F4.6a.1 F40F4.6a.1 6806   X: 3235754-3243628