WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F40F4.8.1 Sequence Name  F40F4.8.1
Length (nt)  1885   Chromosome Location  X: 3247042-3250531
Chromosome . Primary Identifier  X Chromosome Location . Start  3247042
Chromosome Location . End  3250531 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F40F4.8.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004124 pqn-37 F40F4.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F40F4.8 F40F4.8 1671   X: 3247217-3247374

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F40F4.8.1 3247042 3250531 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon227974   333   X: 3247042-3247374 Caenorhabditis elegans
Exon227975   93   X: 3247551-3247643 Caenorhabditis elegans
Exon227976   102   X: 3247688-3247789 Caenorhabditis elegans
Exon227977   261   X: 3247832-3248092 Caenorhabditis elegans
Exon227978   63   X: 3248638-3248700 Caenorhabditis elegans
Exon227979   262   X: 3248750-3249011 Caenorhabditis elegans
Exon227980   147   X: 3249067-3249213 Caenorhabditis elegans
Exon227981   217   X: 3249264-3249480 Caenorhabditis elegans
Exon227982   101   X: 3249521-3249621 Caenorhabditis elegans
Exon227983   135   X: 3249673-3249807 Caenorhabditis elegans
Exon227984   171   X: 3250361-3250531 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F40F4.8.1 3247042 3250531 -1

1 Sequence

Length
1885

1 Sequence Ontology Term

Identifier Name Description
transcript