WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K09C4.1a.1 Sequence Name  K09C4.1a.1
Length (nt)  1765   Chromosome Location  X: 3298882-3301637
Chromosome . Primary Identifier  X Chromosome Location . Start  3298882
Chromosome Location . End  3301637 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K09C4.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019547 K09C4.1 K09C4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K09C4.1a K09C4.1a 1566   X: 3298910-3299079

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K09C4.1a.1 3298882 3301637 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon228093   198   X: 3298882-3299079 Caenorhabditis elegans
Exon228094   120   X: 3299275-3299394 Caenorhabditis elegans
Exon228095   164   X: 3299444-3299607 Caenorhabditis elegans
Exon228096   52   X: 3299651-3299702 Caenorhabditis elegans
Exon228097   75   X: 3299783-3299857 Caenorhabditis elegans
Exon228098   125   X: 3299906-3300030 Caenorhabditis elegans
Exon228099   95   X: 3300083-3300177 Caenorhabditis elegans
Exon228100   111   X: 3300227-3300337 Caenorhabditis elegans
Exon228102   116   X: 3300380-3300495 Caenorhabditis elegans
Exon228103   80   X: 3300539-3300618 Caenorhabditis elegans
Exon228104   113   X: 3300662-3300774 Caenorhabditis elegans
Exon228105   134   X: 3300933-3301066 Caenorhabditis elegans
Exon228107   73   X: 3301109-3301181 Caenorhabditis elegans
Exon228109   45   X: 3301230-3301274 Caenorhabditis elegans
Exon228111   54   X: 3301331-3301384 Caenorhabditis elegans
Exon228114   210   X: 3301428-3301637 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K09C4.1a.1 3298882 3301637 1

1 Sequence

Length
1765

1 Sequence Ontology Term

Identifier Name Description
transcript