WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C12D12.1c.1 Sequence Name  C12D12.1c.1
Length (nt)  2717   Chromosome Location  X: 3501165-3505251
Chromosome . Primary Identifier  X Chromosome Location . Start  3501165
Chromosome Location . End  3505251 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C12D12.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015713 C12D12.1 C12D12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C12D12.1c C12D12.1c 2478   X: 3501256-3501397

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C12D12.1c.1 3501165 3505251 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon228531   233   X: 3501165-3501397 Caenorhabditis elegans
Exon228536   116   X: 3501450-3501565 Caenorhabditis elegans
Exon228539   151   X: 3501615-3501765 Caenorhabditis elegans
Exon228542   107   X: 3502554-3502660 Caenorhabditis elegans
Exon228545   156   X: 3502704-3502859 Caenorhabditis elegans
Exon228548   85   X: 3502913-3502997 Caenorhabditis elegans
Exon228551   104   X: 3503120-3503223 Caenorhabditis elegans
Exon228554   122   X: 3503271-3503392 Caenorhabditis elegans
Exon228557   377   X: 3503436-3503812 Caenorhabditis elegans
Exon228560   101   X: 3503869-3503969 Caenorhabditis elegans
Exon228563   613   X: 3504016-3504628 Caenorhabditis elegans
Exon228565   552   X: 3504700-3505251 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C12D12.1c.1 3501165 3505251 1

1 Sequence

Length
2717

1 Sequence Ontology Term

Identifier Name Description
transcript