WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56B6.5c.1 Sequence Name  F56B6.5c.1
Length (nt)  1293   Chromosome Location  X: 3522780-3531696
Chromosome . Primary Identifier  X Chromosome Location . Start  3522780
Chromosome Location . End  3531696 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56B6.5c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006864 npr-16 F56B6.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56B6.5c F56B6.5c 1293   X: 3522780-3522803

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56B6.5c.1 3522780 3531696 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon228565   24   X: 3522780-3522803 Caenorhabditis elegans
Exon228569   116   X: 3528812-3528927 Caenorhabditis elegans
Exon228576   161   X: 3529431-3529591 Caenorhabditis elegans
Exon228581   88   X: 3529647-3529734 Caenorhabditis elegans
Exon228586   88   X: 3529792-3529879 Caenorhabditis elegans
Exon228591   98   X: 3529956-3530053 Caenorhabditis elegans
Exon228596   198   X: 3530206-3530403 Caenorhabditis elegans
Exon228599   192   X: 3530453-3530644 Caenorhabditis elegans
Exon228606   72   X: 3530923-3530994 Caenorhabditis elegans
Exon228611   114   X: 3531054-3531167 Caenorhabditis elegans
Exon228613   142   X: 3531555-3531696 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56B6.5c.1 3522780 3531696 1

1 Sequence

Length
1293

1 Sequence Ontology Term

Identifier Name Description
transcript