WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56B6.5a.1 Sequence Name  F56B6.5a.1
Length (nt)  1453   Chromosome Location  X: 3528812-3531862
Chromosome . Primary Identifier  X Chromosome Location . Start  3528812
Chromosome Location . End  3531862 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56B6.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006864 npr-16 F56B6.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56B6.5a F56B6.5a 1281   X: 3528818-3528927

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56B6.5a.1 3528812 3531862 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon228572   116   X: 3528812-3528927 Caenorhabditis elegans
Exon228573   161   X: 3529431-3529591 Caenorhabditis elegans
Exon228578   88   X: 3529647-3529734 Caenorhabditis elegans
Exon228583   88   X: 3529792-3529879 Caenorhabditis elegans
Exon228588   98   X: 3529956-3530053 Caenorhabditis elegans
Exon228593   198   X: 3530206-3530403 Caenorhabditis elegans
Exon228600   210   X: 3530453-3530662 Caenorhabditis elegans
Exon228603   72   X: 3530923-3530994 Caenorhabditis elegans
Exon228608   114   X: 3531054-3531167 Caenorhabditis elegans
Exon228616   308   X: 3531555-3531862 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56B6.5a.1 3528812 3531862 1

1 Sequence

Length
1453

1 Sequence Ontology Term

Identifier Name Description
transcript