WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56B6.4a.1 Sequence Name  F56B6.4a.1
Length (nt)  1609   Chromosome Location  X: 3537641-3540940
Chromosome . Primary Identifier  X Chromosome Location . Start  3537641
Chromosome Location . End  3540940 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56B6.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006863 gyg-1 F56B6.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56B6.4a F56B6.4a 1290   X: 3537642-3537764

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56B6.4a.1 3537641 3540940 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

8 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon228623   124   X: 3537641-3537764 Caenorhabditis elegans
Exon228625   192   X: 3537814-3538005 Caenorhabditis elegans
Exon228628   121   X: 3538056-3538176 Caenorhabditis elegans
Exon228631   169   X: 3538230-3538398 Caenorhabditis elegans
Exon228634   130   X: 3539213-3539342 Caenorhabditis elegans
Exon228637   378   X: 3539446-3539823 Caenorhabditis elegans
Exon228638   57   X: 3539896-3539952 Caenorhabditis elegans
Exon228640   438   X: 3540503-3540940 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56B6.4a.1 3537641 3540940 1

1 Sequence

Length
1609

1 Sequence Ontology Term

Identifier Name Description
transcript