WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56B6.2a.1 Sequence Name  F56B6.2a.1
Length (nt)  3118   Chromosome Location  X: 3542542-3557729
Chromosome . Primary Identifier  X Chromosome Location . Start  3542542
Chromosome Location . End  3557729 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56B6.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004350 rgs-7 F56B6.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56B6.2a F56B6.2a 2460   X: 3542631-3542673

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56B6.2a.1 3542542 3557729 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon228643   132   X: 3542542-3542673 Caenorhabditis elegans
Exon228647   115   X: 3542752-3542866 Caenorhabditis elegans
Exon228652   268   X: 3545556-3545823 Caenorhabditis elegans
Exon228659   120   X: 3546497-3546616 Caenorhabditis elegans
Exon228662   587   X: 3546665-3547251 Caenorhabditis elegans
Exon228667   72   X: 3547447-3547518 Caenorhabditis elegans
Exon228673   190   X: 3547569-3547758 Caenorhabditis elegans
Exon228681   90   X: 3547830-3547919 Caenorhabditis elegans
Exon228685   211   X: 3550061-3550271 Caenorhabditis elegans
Exon228692   128   X: 3552547-3552674 Caenorhabditis elegans
Exon228699   113   X: 3552814-3552926 Caenorhabditis elegans
Exon228708   134   X: 3556440-3556573 Caenorhabditis elegans
Exon228717   170   X: 3556632-3556801 Caenorhabditis elegans
Exon228726   125   X: 3556880-3557004 Caenorhabditis elegans
Exon228742   663   X: 3557067-3557729 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56B6.2a.1 3542542 3557729 1

1 Sequence

Length
3118

1 Sequence Ontology Term

Identifier Name Description
transcript