WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

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mRNA :

WormMine ID  Transcript:F56B6.2i.1 Sequence Name  F56B6.2i.1
Length (nt)  2985   Chromosome Location  X: 3542548-3557596
Chromosome . Primary Identifier  X Chromosome Location . Start  3542548
Chromosome Location . End  3557596 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56B6.2i.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004350 rgs-7 F56B6.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56B6.2i F56B6.2i 2466   X: 3542631-3542673

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56B6.2i.1 3542548 3557596 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon228645   126   X: 3542548-3542673 Caenorhabditis elegans
Exon228649   115   X: 3542752-3542866 Caenorhabditis elegans
Exon228655   268   X: 3545556-3545823 Caenorhabditis elegans
Exon228658   126   X: 3546491-3546616 Caenorhabditis elegans
Exon228665   587   X: 3546665-3547251 Caenorhabditis elegans
Exon228670   72   X: 3547447-3547518 Caenorhabditis elegans
Exon228677   190   X: 3547569-3547758 Caenorhabditis elegans
Exon228684   90   X: 3547830-3547919 Caenorhabditis elegans
Exon228689   211   X: 3550061-3550271 Caenorhabditis elegans
Exon228697   128   X: 3552547-3552674 Caenorhabditis elegans
Exon228704   113   X: 3552814-3552926 Caenorhabditis elegans
Exon228715   134   X: 3556440-3556573 Caenorhabditis elegans
Exon228724   170   X: 3556632-3556801 Caenorhabditis elegans
Exon228733   125   X: 3556880-3557004 Caenorhabditis elegans
Exon228740   530   X: 3557067-3557596 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56B6.2i.1 3542548 3557596 1

1 Sequence

Length
2985

1 Sequence Ontology Term

Identifier Name Description
transcript