WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56B6.2j.1 Sequence Name  F56B6.2j.1
Length (nt)  2469   Chromosome Location  X: 3542631-3557160
Chromosome . Primary Identifier  X Chromosome Location . Start  3542631
Chromosome Location . End  3557160 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56B6.2j.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004350 rgs-7 F56B6.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56B6.2j F56B6.2j 2469   X: 3542631-3542673

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56B6.2j.1 3542631 3557160 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon228646   43   X: 3542631-3542673 Caenorhabditis elegans
Exon228650   115   X: 3542752-3542866 Caenorhabditis elegans
Exon228656   268   X: 3545556-3545823 Caenorhabditis elegans
Exon228661   120   X: 3546497-3546616 Caenorhabditis elegans
Exon228666   587   X: 3546665-3547251 Caenorhabditis elegans
Exon228671   72   X: 3547447-3547518 Caenorhabditis elegans
Exon228678   190   X: 3547569-3547758 Caenorhabditis elegans
Exon228680   99   X: 3547821-3547919 Caenorhabditis elegans
Exon228690   211   X: 3550061-3550271 Caenorhabditis elegans
Exon228698   128   X: 3552547-3552674 Caenorhabditis elegans
Exon228705   113   X: 3552814-3552926 Caenorhabditis elegans
Exon228716   134   X: 3556440-3556573 Caenorhabditis elegans
Exon228725   170   X: 3556632-3556801 Caenorhabditis elegans
Exon228734   125   X: 3556880-3557004 Caenorhabditis elegans
Exon228736   94   X: 3557067-3557160 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56B6.2j.1 3542631 3557160 1

1 Sequence

Length
2469

1 Sequence Ontology Term

Identifier Name Description
transcript